Databases available for BLAST search

Peptide Sequence Databases

nr

All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF

month

All new or revised GenBank CDS translation+PDB+SwissProt+PIR+PRF released in the last 30 days.

swissprot

the last major release of the SWISS-PROT protein sequence database (no updates)

yeast

Yeast (Saccharomyces cerevisiae) protein sequences.

E. coli

E. coli genomic CDS translations

pdb

Sequences derived from the 3-dimensional structure Brookhaven Protein Data Bank

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Nucleotide Sequence Databases

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nr

All Non-redundant GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS, or phase 0, 1 or 2 HTGS sequences)

est

Database of GenBank+EMBL+DDBJ sequences from EST Divisions

human est

Human subset of GenBank+EMBL+DDBJ sequences from EST Divisions

mouse est

Mouse subset of GenBank+EMBL+DDBJ sequences from EST Divisions

other est

Non-Mouse, non-Human sequences of GenBank+EMBL+DDBJ sequences from EST Divisions

pat

Nucleotides from the Patent division of GenBank.

pdb

Sequences derived from the 3-dimensional structure from Brookhaven Protein Data Bank

month

All new or revised GenBank+EMBL+DDBJ+PDB sequences released in the last 30 days.

htg

htgs unfinished High Throughput Genomic Sequences: phases 0, 1 and 2 (finished, phase 3 HTG sequences are in nr)

yeast

Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences

ecoli

E. coli genomic nucleotide sequences

pdb

Sequences derived from the 3-dimensional structure

gss

Genome Survey Sequence, includes single-pass genomic data, exon-trapped sequences, and Alu PCR sequences.