Number of Sequences to BLAST

Query Type

Database

Blast Program

Comments

1 to many

nucleotide

nucleotide

blastn

dna - dna query

peptide

peptide

blastp

protein - protein query

nucleotide

blastx

translated query sequence.

nucleotide

nucleotide

tblastx

More sensitive than blastn but much slower

peptide

tblastn

database is translated

   
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